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[Ornithology • 2017] Myzomela irianawidodoae • A Colourful New Species of Myzomela Honeyeater from Rote Island in eastern Indonesia ---ScRaBBlE

Myzomela irianawidodoae Prawiradilaga, Baveja, Suparno, Ashari, Ng, Gwee, Verbelen & Rheindt, 2017  photo:   Philippe Verbelen  e-journ...

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Showing posts with label Phylogenomics. Show all posts
Showing posts with label Phylogenomics. Show all posts

Wednesday, March 20, 2019

[Invertebrate • 2018] Phylogenomics Illuminates the Backbone of the Myriapoda Tree of Life and Reconciles Morphological and Molecular Phylogenies ---ScRaBBlE


Figure 1. The four main groups of myriapods. AOtostigmus (Parotostigmuspococki (Northern Range, Trinidad, Trinidad and Tobago) (Chilopoda, Scolopendromorpha); BHanseniella sp. (South Island, New Zealand) (Symphyla, Scutigerellidae); CPauropus huxleyi (Massachusetts, USA) (Pauropoda, Tetramerocerata); and DPlatydesmus sp. (La Selva, Costa Rica) (Diplopoda, Platydesmida).
Fernández, Edgecombe & Giribet, 2018.

Abstract
The interrelationships of the four classes of Myriapoda have been an unresolved question in arthropod phylogenetics and an example of conflict between morphology and molecules. Morphology and development provide compelling support for Diplopoda (millipedes) and Pauropoda being closest relatives, and moderate support for Symphyla being more closely related to the diplopod-pauropod group than any of them are to Chilopoda (centipedes). In contrast, several molecular datasets have contradicted the Diplopoda–Pauropoda grouping (named Dignatha), often recovering a Symphyla–Pauropoda group (named Edafopoda). Here we present the first transcriptomic data including a pauropod and both families of symphylans, allowing myriapod interrelationships to be inferred from phylogenomic data from representatives of all main lineages. Phylogenomic analyses consistently recovered Dignatha with strong support. Taxon removal experiments identified outgroup choice as a critical factor affecting myriapod interrelationships. Diversification of millipedes in the Ordovician and centipedes in the Silurian closely approximates fossil evidence whereas the deeper nodes of the myriapod tree date to various depths in the Cambrian-Early Ordovician, roughly coinciding with recent estimates of terrestrialisation in other arthropod lineages, including hexapods and arachnids.

Figure 2A. Preferred phylogenetic hypothesis of myriapod interrelationships (PhyloBayes, matrix 1). 2B. DensiTree visualization of the four most congruent analyseis (PhyloBayes, matrices 2 and 3; PhyML, matrix 3). 2C, 2D. Main conflicting alternative hypothesis (2C, PhyML, matrix 2; 2D, PhyML, matrix 1). 2E. Phylogenetic hypothesis of Myriapoda based on 232 morphological characters coded for both extant and extinct species (see Methods for further details); strict consensus of 488 trees of 257 steps; Fossil taxa are identified with a dagger symbol. Black circles in nodes represent high support (> 95% posterior probability, > 90% bootstrap support). CHE: Chelicerata. PAN: Pancrustacea. CHI: Chilopoda. SYM: Symphyla. PAU: Pauropoda. DIP: Diplopoda. Colour codes for each clade are maintained in all figures.

Figure 1. The four main groups of myriapods.
AOtostigmus (Parotostigmuspococki (Northern Range, Trinidad, Trinidad and Tobago) (Chilopoda, Scolopendromorpha); BHanseniella sp. (South Island, New Zealand) (Symphyla, Scutigerellidae); CPauropus huxleyi (Massachusetts, USA) (Pauropoda, Tetramerocerata); and DPlatydesmus sp. (La Selva, Costa Rica) (Diplopoda, Platydesmida).

Rosa Fernández, Gregory D. Edgecombe and Gonzalo Giribet. 2018. Phylogenomics Illuminates the Backbone of the Myriapoda Tree of Life and Reconciles Morphological and Molecular Phylogenies. Scientific Reports. 8, 83.  DOI:  10.1038/s41598-017-18562-w

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روابط التحميل والمشاهدة، الروابط المباشرة للتحميل
او
شاهد هذا الفيديو القصير لطريقة التحميل البسيطة


كيف تحصل على مدونة جاهزة بآلاف المواضيع والمشاركات من هنا
شاهد قناة منتدى مدونات بلوجر جاهزة بألاف المواضيع والمشاركات على اليوتيوب لمزيد من الشرح من هنا
رابط مدونة منتدى مدونات بلوجر جاهزة بآلاف المواضيع والمشاركات في أي وقت حــــتى لو تم حذفها من هنا
شاهد صفحة منتدى مدونات بلوجر جاهزة بألاف المواضيع والمشاركات على الفيس بوك لمزيد من الشرح من هنا
تعرف على ترتيب مواضيع منتدى مدونات بلوجر جاهزة بآلاف المواضيع والمشاركات (حتى لا تختلط عليك الامور) من هنا

ملاحظة هامة: كل عمليات تنزيل، رفع، وتعديل المواضيع الجاهزة تتم بطريقة آلية، ونعتذر عن اي موضوع مخالف او مخل بالحياء مرفوع بالمدونات الجاهزة بآلاف المواضيع والمشاركات، ولكم ان تقوموا بحذف هذه المواضيع والمشاركات والطريقة بسيطة وسهلة. ــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــسلامـ.

[Herpetology • 2017] Shedding Light On the Imps of Darkness: An Integrative Taxonomic Revision of the Galápagos Marine Iguanas (Genus Amblyrhynchus) ---ScRaBBlE


 Amblyrhynchus cristatus godzilla
Miralles, Macleod, Rodríguez, Ibáñez, Jiménez-Uzcategui, Quezada, Vences & Steinfartz, 2017



Abstract
Marine iguanas are among the most highly emblematic taxa of the Galápagos archipelago but have paradoxically received little attention from taxonomists. Amblyrhynchus is currently considered as a monotypic genus with a total of seven subspecies, A. cristatus cristatus, A. c. nanus, A. c. venustissimus, A. c. albemarlensis, A. c. hassi, A. c. mertensi and A. c. sielmanni. Although consensually followed for more than half a century, this classification does not properly reflect the main natural subdivisions inferred by more recent molecular evolutionary studies. We integrate population genetics, phylogenomics and comparative morphology to propose an updated taxonomy reflecting the evolutionary history of this group. We recognize a single species with 11 divergent population clusters at the level of subspecies: A. c. albermarlensis is recognized as a junior synonym of A. c. cristatus, and five new subspecies are described: Amblyrhynchus cristatus godzilla subsp. nov. (San Cristóbal-Punta Pitt), A. c. jeffreysi subsp. nov. (Wolf and Darwin), A. c. hayampi subsp. nov. (Marchena), A. c. trillmichi subsp. nov. (Santa Fé) and A. c. wikelskii subsp. nov. (Santiago). Recognizing the genetically divergent population clusters as subspecies also highlights several of them as management units in need of conservation efforts, such as the two subspecies endemic to San Cristóbal.

Keywords: Amblyrhynchus, Galápagos, integrative taxonomy, management units (MUs), Marine Iguana, new subspecies. 


Fig 5: Overview of the phenotypic diversity among Amblyrhynchus cristatus subspecies: (A–C) Amblyrhynchus cristatus hassi from Santa Cruz (SFM 57412, 57407, 57408) (D–F) A. cwikelskii subsp. nov. from Santiago (SFM 57447, 57448, 57446), (G–N) A. c. cristatus from Fernandina (OUMNH 6176, CAS 11512, 11511, 11510) and Isabela (SFM 64179, 11258, 65996, 65998), (O–Q) A. c. mertensi from San Cristóbal (SFM 57427, 57430, 57424), (R) A. c. trillmichi subsp. nov. (uncollected living specimen), (S) A. c. godzilla subsp. nov. (uncollected living specimen). HT: holotype, NT: neotype, PT: paratype.
  
Fig 6: Overview of the phenotypic diversity among Amblyrhynchus cristatus subspecies.(A–D) Amblyrhynchus cristatus venustissimus from Champion (CAS 11062) and Española (SFM 57415, 49853, 57413), (E–G) A. c. sielmanni (CAS 12565, SFM 57417, CAS 12570), (H–J) A. c. nanus from Genovesa (NHM 1946.8.30.20, SFM 57432, SFM 57445), (K–N) A. c. hayampi subsp. nov. from Marchena (CAS 12467, 12458, 12449, 12471), (O–U) A. c. jeffreysi subspnov. from Wolf (CAS 12690, CAS-SUR 4777, CAS 12693, CAS 12961) and Darwin (CAS 12694, 12696, 12695). HT: holotype, PT: paratype.


Amblyrhynchus cristatus Bell, 1825 

Amblyrhynchus cristatus cristatus Bell, 1825 (Figs 5G–N, 7)
Amblyrhynchus cristatus nanus Garman, 1892 (Figs 6H–J, 7)
Amblyrhynchus cristatus venustissimus Eibl-Eibesfeldt, 1956 (Figs 6A–D, 7)
Amblyrhynchus cristatus hassi Eibl-Eibesfeldt, 1962 (Figs 5A–C, 7)
Amblyrhynchus cristatus mertensi Eibl-Eibesfeldt, 1962 (Figs 5O–Q, 7)
Amblyrhynchus cristatus sielmanni Eibl-Eibesfeldt, 1962 (Figs 6E–G, 7)

Fig 7: Photographic plate showing the different subspecies of Marine Iguana (living mature males exclusively).
(A) Amblyrhynchus cristatus nanus, Genovesa, (B) A. c. hayampi subsp. nov., Marchena, (C) A. c. sielmanni, Pinta, (D, E) A. c. venustissimus, Española and Floreana, respectively, (F) A. c. trillmichi subsp. nov., Santa Fé, (G) A. c. hassi, Santa Cruz, (H) A. c. cristatus, Fernandina, (I) A. c. cristatus, Isabela, (J) A. c. mertensi, San Cristóbal, (K) A. c. godzilla subsp. nov., San Cristóbal, (L) A. c. wikelskii subsp. nov., Santiago.
Pictures from A. Ibañez (E, K), M. Krueger (A), H. Snell (B, D, H), S. Steinfartz (C, I, L), M. Vences (G, J), M. Vitousek (F).  DOI:  10.1093/zoolinnean/zlx007   

Fig 8: Distribution of the different subspecies of Galápagos marine iguanas according to the classification of Eibl-Eibesfeldt (1962) and the new taxonomy proposed herein. The orange dot on the southern coast of San Cristóbal represents the population of putative migrant specimens of A. c. venustissimus.



Amblyrhynchus cristatus hayampi subsp. nov. (Figs 6K–N, 7, 9B)

Etymology: The subspecific epithet hayampi refers to the word used to designate the common iguana in Kichwa (a Quechuan language representing one of the three official languages of Ecuador and currently spoken by a million people in South America).

Geographic distribution: Marchena and very likely its satellite islets (Fig. 8).


Amblyrhynchus cristatus jeffreysi subsp. nov. (Figs 6O–U, 7, 9A)

Etymology: The subspecies name is a patronym for Jeffreys Málaga, a ranger of the Galápagos National Park with an outstanding interest and enthusiasm for the fauna and flora of the Galápagos, and especially for marine iguanas. Jeffreys Málaga has been awarded several times ‘Guardaparque del Año,’ or Park Warden of the Year and has been an essential part of our team during several excursions to the Galápagos.

Geographic distribution: Wolf, Darwin (tentative assignment), Roca Redonda and very likely their satellite islets (Fig. 8).






Amblyrhynchus cristatus godzilla subsp. nov. (Figs 5S, 7, 10)

Etymology: The subspecific epithet refers to the fictional saurian monster from the eponym movie franchise, Godzilla, created by Tomoyuki Tanaka (IMDb, 2016). Explicitly mentioned in the title sequence of the 1990s American remake (Emmerich, 1998), the physical appearance and swimming behaviour of marine iguanas were a significant source of inspiration to the creature′s designer (Patrick Tatopoulos, personal communication). The name is an invariable noun in apposition.

Geographic distribution: Northern (north-eastern) part of San Cristóbal and the satellite islets off the northern coast of San Cristóbal (Fig. 8).


Amblyrhynchus cristatus trillmichi subsp. nov. (Figs 5R, 7)

Etymology: The subspecific epithet refers to Prof. Dr. Fritz Trillmich, a foremost biological researcher in Germany who has spent a lifetime working on the biology of the Galápagos islands. For many years Fritz Trillmich worked together with Martin Wikelski on the island of Santa Fé, where their research on the local population produced important insights into the behaviour and ecology of marine iguanas. In addition to undertaking his own research, Fritz Trillmich is Professor Emeritus of Behavioural Ecology at the University of Bielefeld where he continues to inspire and mentor generations of young researchers who will continue his legacy for years to come.

Geographic distribution: Santa Fé and very likely its satellite islets (Fig. 8).


Amblyrhynchus cristatus wikelskii subsp. nov. (Figs 5D–F, 7, 9C)

Etymology: The subspecies name is a patronym for Prof. Dr. Martin Wikelski in recognition of his outstanding research on marine iguanas for several decades. Martin Wikelski has been fascinated by marine iguanas, which served as a study system for his behavioural and ecological research from his PhD onwards. He has published important papers on marine iguana ecology and conservation, for instance demonstrating the devastating effects of an oil spill on this species, and showing that marine iguanas can shrink in response to starvation induced by El Niño–based climate fluctuations.

Geographic distribution: Santiago, Rábida and very likely their satellite islets (Fig. 8).




Aurélien Miralles, Amy Macleod, Ariel Rodríguez, Alejandro Ibáñez, Gustavo Jiménez-Uzcategui, Galo Quezada, Miguel Vences and Sebastian Steinfartz. 2017. Shedding Light On the Imps of Darkness: An Integrative Taxonomic Revision of the Galápagos Marine Iguanas (Genus Amblyrhynchus).    Zoological Journal of the Linnean Society.   DOI:  10.1093/zoolinnean/zlx007

Godzilla of the Galápagos and other speciation stories

Godzilla marine iguana discovered on Galapagos
Conservation of threatened iconic marine iguanas improved by a new taxonomy

  

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روابط التحميل والمشاهدة، الروابط المباشرة للتحميل
او
شاهد هذا الفيديو القصير لطريقة التحميل البسيطة


كيف تحصل على مدونة جاهزة بآلاف المواضيع والمشاركات من هنا
شاهد قناة منتدى مدونات بلوجر جاهزة بألاف المواضيع والمشاركات على اليوتيوب لمزيد من الشرح من هنا
رابط مدونة منتدى مدونات بلوجر جاهزة بآلاف المواضيع والمشاركات في أي وقت حــــتى لو تم حذفها من هنا
شاهد صفحة منتدى مدونات بلوجر جاهزة بألاف المواضيع والمشاركات على الفيس بوك لمزيد من الشرح من هنا
تعرف على ترتيب مواضيع منتدى مدونات بلوجر جاهزة بآلاف المواضيع والمشاركات (حتى لا تختلط عليك الامور) من هنا

ملاحظة هامة: كل عمليات تنزيل، رفع، وتعديل المواضيع الجاهزة تتم بطريقة آلية، ونعتذر عن اي موضوع مخالف او مخل بالحياء مرفوع بالمدونات الجاهزة بآلاف المواضيع والمشاركات، ولكم ان تقوموا بحذف هذه المواضيع والمشاركات والطريقة بسيطة وسهلة. ــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــسلامـ.

[Botany • 2019] Pre‐Pleistocene Origin of Phylogeographical Breaks in African Rain Forest Trees: New Insights from Greenwayodendron (Annonaceae) Phylogenomics ---ScRaBBlE


Greenwayodendron sp.

in Migliore, Kaymak, Mariac, Couvreur, et al., 2019.

Abstract
Aim: 
Palaeoecological records indicate that Pleistocene glaciations affected the African rain forest, probably causing its fragmentation, which could explain phylogeographical breaks documented in many tree species. This refuge hypothesis was further tested through species distribution models, hindcasting persistence during the Last Glacial Maximum. However, previous studies failed to estimate with sufficient precision the divergence time between phylogeographical entities to confirm their Pleistocene origin. Developing genomic tools on a representative tree of mature rain forests, we test if parapatric genetic clusters documented in widespread tree species can be interpreted as the legacy of past population fragmentation during the last glacial period(s).

Location: Tropical Africa, Guineo‐Congolian forests.

Taxon: Greenwayodendron (Annonaceae).

Methods:
To further test the Pleistocene refuge hypothesis by molecular dating, we sequenced the plastome of 145 individuals of the shade‐tolerant rain forest tree Greenwayodendron suaveolens and congeneric species, and genotyped the same samples using nuclear microsatellites to identify genetic clusters.

Results: 
Five plastid phylogroups of G. suaveolens occur in parapatry throughout Central Africa, following a spatial pattern generally congruent with genetic clusters. Four of them diverged 3.5–4.5 Ma, whereas the fifth one, located in the Cameroon volcanic line (CVL), diverged 8.3 Ma, in the range of divergence times between Greenwayodendron species, highlighting the key role of the CVL in hosting ancient lineages. Within phylogroups, most nodes were dated from 0.9 to 3.2 Myr and a correlation between haplotype divergence and spatial distance was still perceptible, indicating a slow population dynamic.

Main conclusions: 
The phylogeographical structures of Central African trees probably established during the Pliocene or early Pleistocene, and while they might have been reinforced during subsequent glacial–interglacial cycles, interglacial phases did not lead to genetic homogenization. Therefore, interpreting phylogeographical patterns of African trees must account for a much deeper past than previously assumed, and cannot be limited to the last glacial period.

Keywords: African rain forests, evolutionary history, Greenwayodendron, High‐throughput sequencing, molecular dating, nuclear microsatellites, phylogeography, plastome captures, Pleistocene glaciations




CONCLUSIONS
The well‐resolved plastome phylogeny of Greenwayodendron species challenges the accepted view of Central African forest historical dynamics by showing that phylogeographical patterns of mature forest trees can have a very ancient origin, pre‐dating the Pleistocene. Our results call for a reassessment of the reference time‐scale traditionally used to interpret phylogeographical patterns in African rain forest trees, earlier than the last glacial cycle. The long generation time of shade‐tolerant tree species, their limited dispersal capacity and their incapacity to colonize open habitats probably explain their slow spatial dynamics, which in turn induces genetic signatures of very ancient historical or biogeographical events.

    


Jérémy Migliore, Esra Kaymak, Cédric Mariac, Thomas L. P. Couvreur, Brandet‐Junior Lissambou, Rosalía Piñeiro and Olivier J. Hardy. 2019. Pre‐Pleistocene Origin of Phylogeographical Breaks in African Rain Forest Trees: New Insights from Greenwayodendron (Annonaceae) Phylogenomics. Journal of Biogeography.  DOI: 10.1111/jbi.13476  

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روابط التحميل والمشاهدة، الروابط المباشرة للتحميل
او
شاهد هذا الفيديو القصير لطريقة التحميل البسيطة


كيف تحصل على مدونة جاهزة بآلاف المواضيع والمشاركات من هنا
شاهد قناة منتدى مدونات بلوجر جاهزة بألاف المواضيع والمشاركات على اليوتيوب لمزيد من الشرح من هنا
رابط مدونة منتدى مدونات بلوجر جاهزة بآلاف المواضيع والمشاركات في أي وقت حــــتى لو تم حذفها من هنا
شاهد صفحة منتدى مدونات بلوجر جاهزة بألاف المواضيع والمشاركات على الفيس بوك لمزيد من الشرح من هنا
تعرف على ترتيب مواضيع منتدى مدونات بلوجر جاهزة بآلاف المواضيع والمشاركات (حتى لا تختلط عليك الامور) من هنا

ملاحظة هامة: كل عمليات تنزيل، رفع، وتعديل المواضيع الجاهزة تتم بطريقة آلية، ونعتذر عن اي موضوع مخالف او مخل بالحياء مرفوع بالمدونات الجاهزة بآلاف المواضيع والمشاركات، ولكم ان تقوموا بحذف هذه المواضيع والمشاركات والطريقة بسيطة وسهلة. ــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــسلامـ.

[Fungi • 2019] Megaphylogeny Resolves Global Patterns of Mushroom (Agaricomycetes) Evolution ---ScRaBBlE


 Phylogenetic relationships and diversification across 5,284 mushroom-forming fungi. 
in Varga, Krizsán, Földi, et al., 2019. 

Mushroom-forming fungi (Agaricomycetes) have the greatest morphological diversity and complexity of any group of fungi. They have radiated into most niches and fulfil diverse roles in the ecosystem, including wood decomposers, pathogens or mycorrhizal mutualists. Despite the importance of mushroom-forming fungi, large-scale patterns of their evolutionary history are poorly known, in part due to the lack of a comprehensive and dated molecular phylogeny. Here, using multigene and genome-based data, we assemble a 5,284-species phylogenetic tree and infer ages and broad patterns of speciation/extinction and morphological innovation in mushroom-forming fungi. Agaricomycetes started a rapid class-wide radiation in the Jurassic, coinciding with the spread of (sub)tropical coniferous forests and a warming climate. A possible mass extinction, several clade-specific adaptive radiations and morphological diversification of fruiting bodies followed during the Cretaceous and the Paleogene, convergently giving rise to the classic toadstool morphology, with a cap, stalk and gills (pileate-stipitate morphology). This morphology is associated with increased rates of lineage diversification, suggesting it represents a key innovation in the evolution of mushroom-forming fungi. The increase in mushroom diversity started during the Mesozoic-Cenozoic radiation event, an era of humid climate when terrestrial communities dominated by gymnosperms and reptiles were also expanding.

Fig. 1: Phylogenetic relationships and diversification across 5,284 mushroom-forming fungi.
One of the 245 analysed maximum-likelihood trees was randomly chosen and visualized. Trees were inferred from nrLSU, rpb2, ef1-a sequences with a phylogenomic backbone constraint of deep nodes. Branches are coloured by net diversification (speciation minus extinction) rate inferred in Bayesian Analysis of Macroevolutionary Mixtures (BAMM). Warmer colours denote a higher rate of diversification. Significant shifts in diversification rate are shown by triangles at nodes. Only shifts present on >50% of ten trees, with a Bayesian posterior probability >0.5 and a posterior odds ratio >5 are shown. See Supplementary Data 6 for detailed discussion of shifts. Reconstructed probabilities of ancestral plant hosts for order-level clades are shown as pie charts partitioned by the inferred ancestral probability for gymnosperm (green) and angiosperm host (black). Pie charts are given for the most recent common ancestors of each order plus backbone nodes within the Agaricales—for small orders see Supplementary Data 3. Inner and outer bars around the tree denote extant substrate preference (black, angiosperm; green, gymnosperm; grey, generalist) and the placement of species used for inferring the 650-gene phylogenomic backbone phylogeny. Geological time scale is indicated with grey/white concentric rings.





Torda Varga, Krisztina Krizsán, Csenge Földi, Bálint Dima, Marisol Sánchez-García, Santiago Sánchez-Ramírez, Gergely J. Szöllősi, János G. Szarkándi, Viktor Papp, László Albert, William Andreopoulos, Claudio Angelini, Vladimír Antonín, Kerrie W. Barry, Neale L. Bougher, Peter Buchanan, Bart Buyck, Viktória Bense, Pam Catcheside, Mansi Chovatia, Jerry Cooper, Wolfgang Dämon, Dennis Desjardin, Péter Finy, József Geml, Sajeet Haridas, Karen Hughes, Alfredo Justo, Dariusz Karasiński, Ivona Kautmanova, Brigitta Kiss, Sándor Kocsubé, Heikki Kotiranta, Kurt M. LaButti, Bernardo E. Lechner, Kare Liimatainen, Anna Lipzen, Zoltán Lukács, Sirma Mihaltcheva, Louis N. Morgado, Tuula Niskanen, Machiel E. Noordeloos, Robin A. Ohm, Beatriz Ortiz-Santana, Clark Ovrebo, Nikolett Rácz, Robert Riley, Anton Savchenko, Anton Shiryaev, Karl Soop, Viacheslav Spirin, Csilla Szebenyi, Michal Tomšovský, Rodham E. Tulloss, Jessie Uehling, Igor V. Grigoriev, Csaba Vágvölgyi, Tamás Papp, Francis M. Martin, Otto Miettinen, David S. Hibbett and László G. Nagy. 2019. Megaphylogeny Resolves Global Patterns of Mushroom Evolution. Nature Ecology & Evolution.  DOI: 10.1038/s41559-019-0834-1   


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روابط التحميل والمشاهدة، الروابط المباشرة للتحميل
او
شاهد هذا الفيديو القصير لطريقة التحميل البسيطة


كيف تحصل على مدونة جاهزة بآلاف المواضيع والمشاركات من هنا
شاهد قناة منتدى مدونات بلوجر جاهزة بألاف المواضيع والمشاركات على اليوتيوب لمزيد من الشرح من هنا
رابط مدونة منتدى مدونات بلوجر جاهزة بآلاف المواضيع والمشاركات في أي وقت حــــتى لو تم حذفها من هنا
شاهد صفحة منتدى مدونات بلوجر جاهزة بألاف المواضيع والمشاركات على الفيس بوك لمزيد من الشرح من هنا
تعرف على ترتيب مواضيع منتدى مدونات بلوجر جاهزة بآلاف المواضيع والمشاركات (حتى لا تختلط عليك الامور) من هنا

ملاحظة هامة: كل عمليات تنزيل، رفع، وتعديل المواضيع الجاهزة تتم بطريقة آلية، ونعتذر عن اي موضوع مخالف او مخل بالحياء مرفوع بالمدونات الجاهزة بآلاف المواضيع والمشاركات، ولكم ان تقوموا بحذف هذه المواضيع والمشاركات والطريقة بسيطة وسهلة. ــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــسلامـ.

[Herpetology • 2018] Phylogenomics of Montane Frogs of the Brazilian Atlantic Forest is Consistent with Isolation in Sky Islands Followed by Climatic Stability ---ScRaBBlE


Brachycephalus investigated in the present study. 
 
Brachycephalus brunneusB. izecksohni; B. fuscolineatus B. auroguttatus


in Pie, Faircloth, Ribeiro, et al., 2018.

Abstract
Despite encompassing a relatively small geographical area, montane regions harbour disproportionately high levels of species diversity and endemism. Nonetheless, relatively little is known about the evolutionary mechanisms that ultimately lead to montane diversity. In this study, we used target capture of ultraconserved elements to investigate the phylogenetic relationships and diversification patterns of Melanophryniscus (Bufonidae) and Brachycephalus (Brachycephalidae), two frog genera that occur in sky islands of the southern Atlantic Forest of Brazil. Specifically, we tested whether diversification of montane species in these genera could be explained by a single climatic shift leading to isolation in sky islands, followed by climatic stability that maintained populations in allopatry. In both genera, the topologies inferred using concatenation and coalescent-based methods were concordant and had strong nodal support, except for a few recent splits, which nevertheless tended to be supported by more informative loci. Estimation of divergence time of a combined dataset using both genera is consistent with a concordant timing of their diversification. These results support the scenario of diversification by isolation in sky islands and suggest that allopatry attributable to climatic gradients in montane regions is an important mechanism for generating species diversity and endemism in these regions.

Brachycephalus, coalescent, Melanophryniscus, target enrichment, ultraconserved elements

Figure 1. Examples of the species of Brachycephalus investigated in the present study.
E, Brachycephalus brunneus. F, Brachycephalus izecksohni. G, Brachycephalus fuscolineatus. H, Brachycephalus auroguttatus.
Photographs by L.F. Ribeiro.


Marcio R. Pie, Brant C. Faircloth, Luiz F. Ribeiro, Marcos R. Bornschein and John E Mccormack. 2018. Phylogenomics of Montane Frogs of the Brazilian Atlantic Forest is Consistent with Isolation in Sky Islands Followed by Climatic Stability. Biological Journal of the Linnean Society. bly093.   DOI: 10.1093/biolinnean/bly093   

Marcio R. Pie, Brant C Faircloth, Luiz Fernando Ribeiro, Marcos R. Bornschein and John McCormack. 2018. Phylogenomics of montane frogs of the Brazilian Atlantic Forest supports a scenario of isolation in sky islands followed by relative climatic stability. bioRxiv. 226159.  DOI: 10.1101/226159


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روابط التحميل والمشاهدة، الروابط المباشرة للتحميل
او
شاهد هذا الفيديو القصير لطريقة التحميل البسيطة


كيف تحصل على مدونة جاهزة بآلاف المواضيع والمشاركات من هنا
شاهد قناة منتدى مدونات بلوجر جاهزة بألاف المواضيع والمشاركات على اليوتيوب لمزيد من الشرح من هنا
رابط مدونة منتدى مدونات بلوجر جاهزة بآلاف المواضيع والمشاركات في أي وقت حــــتى لو تم حذفها من هنا
شاهد صفحة منتدى مدونات بلوجر جاهزة بألاف المواضيع والمشاركات على الفيس بوك لمزيد من الشرح من هنا
تعرف على ترتيب مواضيع منتدى مدونات بلوجر جاهزة بآلاف المواضيع والمشاركات (حتى لا تختلط عليك الامور) من هنا

ملاحظة هامة: كل عمليات تنزيل، رفع، وتعديل المواضيع الجاهزة تتم بطريقة آلية، ونعتذر عن اي موضوع مخالف او مخل بالحياء مرفوع بالمدونات الجاهزة بآلاف المواضيع والمشاركات، ولكم ان تقوموا بحذف هذه المواضيع والمشاركات والطريقة بسيطة وسهلة. ــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــسلامـ.

[Invertebrate • 2018] Phylogenomics Illuminates the Backbone of the Myriapoda Tree of Life and Reconciles Morphological and Molecular Phylogenies ---ScRaBBlE


Figure 1. The four main groups of myriapods. AOtostigmus (Parotostigmuspococki (Northern Range, Trinidad, Trinidad and Tobago) (Chilopoda, Scolopendromorpha); BHanseniella sp. (South Island, New Zealand) (Symphyla, Scutigerellidae); CPauropus huxleyi (Massachusetts, USA) (Pauropoda, Tetramerocerata); and DPlatydesmus sp. (La Selva, Costa Rica) (Diplopoda, Platydesmida).
Fernández, Edgecombe & Giribet, 2018.

Abstract
The interrelationships of the four classes of Myriapoda have been an unresolved question in arthropod phylogenetics and an example of conflict between morphology and molecules. Morphology and development provide compelling support for Diplopoda (millipedes) and Pauropoda being closest relatives, and moderate support for Symphyla being more closely related to the diplopod-pauropod group than any of them are to Chilopoda (centipedes). In contrast, several molecular datasets have contradicted the Diplopoda–Pauropoda grouping (named Dignatha), often recovering a Symphyla–Pauropoda group (named Edafopoda). Here we present the first transcriptomic data including a pauropod and both families of symphylans, allowing myriapod interrelationships to be inferred from phylogenomic data from representatives of all main lineages. Phylogenomic analyses consistently recovered Dignatha with strong support. Taxon removal experiments identified outgroup choice as a critical factor affecting myriapod interrelationships. Diversification of millipedes in the Ordovician and centipedes in the Silurian closely approximates fossil evidence whereas the deeper nodes of the myriapod tree date to various depths in the Cambrian-Early Ordovician, roughly coinciding with recent estimates of terrestrialisation in other arthropod lineages, including hexapods and arachnids.

Figure 2A. Preferred phylogenetic hypothesis of myriapod interrelationships (PhyloBayes, matrix 1). 2B. DensiTree visualization of the four most congruent analyseis (PhyloBayes, matrices 2 and 3; PhyML, matrix 3). 2C, 2D. Main conflicting alternative hypothesis (2C, PhyML, matrix 2; 2D, PhyML, matrix 1). 2E. Phylogenetic hypothesis of Myriapoda based on 232 morphological characters coded for both extant and extinct species (see Methods for further details); strict consensus of 488 trees of 257 steps; Fossil taxa are identified with a dagger symbol. Black circles in nodes represent high support (> 95% posterior probability, > 90% bootstrap support). CHE: Chelicerata. PAN: Pancrustacea. CHI: Chilopoda. SYM: Symphyla. PAU: Pauropoda. DIP: Diplopoda. Colour codes for each clade are maintained in all figures.

Figure 1. The four main groups of myriapods.
AOtostigmus (Parotostigmuspococki (Northern Range, Trinidad, Trinidad and Tobago) (Chilopoda, Scolopendromorpha); BHanseniella sp. (South Island, New Zealand) (Symphyla, Scutigerellidae); CPauropus huxleyi (Massachusetts, USA) (Pauropoda, Tetramerocerata); and DPlatydesmus sp. (La Selva, Costa Rica) (Diplopoda, Platydesmida).

Rosa Fernández, Gregory D. Edgecombe and Gonzalo Giribet. 2018. Phylogenomics Illuminates the Backbone of the Myriapoda Tree of Life and Reconciles Morphological and Molecular Phylogenies. Scientific Reports. 8, 83.  DOI:  10.1038/s41598-017-18562-w

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روابط التحميل والمشاهدة، الروابط المباشرة للتحميل
او
شاهد هذا الفيديو القصير لطريقة التحميل البسيطة


كيف تحصل على مدونة جاهزة بآلاف المواضيع والمشاركات من هنا
شاهد قناة منتدى مدونات بلوجر جاهزة بألاف المواضيع والمشاركات على اليوتيوب لمزيد من الشرح من هنا
رابط مدونة منتدى مدونات بلوجر جاهزة بآلاف المواضيع والمشاركات في أي وقت حــــتى لو تم حذفها من هنا
شاهد صفحة منتدى مدونات بلوجر جاهزة بألاف المواضيع والمشاركات على الفيس بوك لمزيد من الشرح من هنا
تعرف على ترتيب مواضيع منتدى مدونات بلوجر جاهزة بآلاف المواضيع والمشاركات (حتى لا تختلط عليك الامور) من هنا

ملاحظة هامة: كل عمليات تنزيل، رفع، وتعديل المواضيع الجاهزة تتم بطريقة آلية، ونعتذر عن اي موضوع مخالف او مخل بالحياء مرفوع بالمدونات الجاهزة بآلاف المواضيع والمشاركات، ولكم ان تقوموا بحذف هذه المواضيع والمشاركات والطريقة بسيطة وسهلة. ــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــــسلامـ.

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